Gene detail information of Glyur000463s00026777.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02340.1 | 2.00E-38 | RING/U-box superfamily protein |
| NR | KHN02654.1 | 1.32E-119 | E3 ubiquitin-protein ligase RING1-like [Glycine soja] |
| Swissprot | tr|Q8LPN7|RNG1L_ARATH | 7.00E-29 | E3 ubiquitin-protein ligase RING1-like |
| trEMBL | tr|I1LWX8|I1LWX8_SOYBN | 1.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G06960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00463 | 106910 | 107974 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000463s00026777.1 | PF13639.1 | zf-RING_2 | 281 | 322 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.624 |
| SRR1783600 | control | 16.259 |
| SRR1783602 | moderate drought stress | 18.128 |
| SRR1811619 | moderate drought stress | 17.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.672 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.315 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.896 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.741 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.417 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.252 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.445 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.606 |
| SRR2967015 | Control (Tissue:root) | 29.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.738 |
| SRR9715740 | Leave | 13.824 |
| SRR9715741 | Leave | 18.238 |
| SRR9715739 | Root | 23.235 |
| SRR9715742 | Root | 22.617 |
| SRR9715743 | Root | 25.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.395 |
| SRR8749028 | MeJA induced 9h | 8.724 |
| SRR8749029 | MeJA induced 9h | 3.307 |
| SRR8749030 | Uninduced | 2.482 |
| SRR8749031 | Uninduced | 2.278 |
| SRR8749032 | Uninduced | 2.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.874 |
| SRR8400027 | Control-Root | 24.208 |