Gene detail information of Glyur000463s00026779.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02350.1 | 0 | galacturonosyltransferase 9 |
| NR | XP_003635905.1 | 0 | Glycosyltransferase [Medicago truncatula] |
| COG | YP_003549730.1 | 9.00E-08 | glycosyl transferase family protein [Coraliomargarita akajimensis DSM 45221] |
| Swissprot | tr|Q9FWA4|GAUT9_ARATH | 0 | Probable galacturonosyltransferase 9 |
| trEMBL | tr|G7ZV05|G7ZV05_MEDTR | 0 | Glycosyltransferase Quasimodo protein, putative {ECO:0000313|EMBL:KEH25211.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00463 | 140231 | 143024 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13648 | GAUT | EC:2.4.1.43 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000463s00026779.1 | PF01501.15 | Glyco_transf_8 | 251 | 528 | 6.30E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.314 |
| SRR1783600 | control | 15.636 |
| SRR1783602 | moderate drought stress | 8.064 |
| SRR1811619 | moderate drought stress | 8.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.401 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.147 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.767 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.647 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.053 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.245 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 44.555 |
| SRR2868004 | Drought Stress(Tissue:root) | 44.207 |
| SRR2967015 | Control (Tissue:root) | 36.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.465 |
| SRR9715740 | Leave | 24.785 |
| SRR9715741 | Leave | 33.803 |
| SRR9715739 | Root | 7.873 |
| SRR9715742 | Root | 24.695 |
| SRR9715743 | Root | 23.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.436 |
| SRR8749028 | MeJA induced 9h | 67.369 |
| SRR8749029 | MeJA induced 9h | 27.929 |
| SRR8749030 | Uninduced | 18.619 |
| SRR8749031 | Uninduced | 14.359 |
| SRR8749032 | Uninduced | 13.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.943 |
| SRR8400027 | Control-Root | 39.761 |