Gene detail information of Glyur000463s00026781.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 1.00E-19 | F-box family protein |
| NR | KEH36751.1 | 1.66E-114 | F-box protein interaction domain protein [Medicago truncatula] |
| Swissprot | tr|Q8GXC7|FBK50_ARATH | 2.00E-21 | F-box/kelch-repeat protein At3g06240 |
| trEMBL | tr|A0A072V503|A0A072V503_MEDTR | 6.00E-115 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH36751.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00463 | 153332 | 161543 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.018 |
| SRR1783600 | control | 0.018 |
| SRR1783602 | moderate drought stress | 0.018 |
| SRR1811619 | moderate drought stress | 0.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.054 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.054 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.010 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.060 |
| SRR8749028 | MeJA induced 9h | 2.677 |
| SRR8749029 | MeJA induced 9h | 2.042 |
| SRR8749030 | Uninduced | 1.448 |
| SRR8749031 | Uninduced | 1.223 |
| SRR8749032 | Uninduced | 1.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.120 |
| SRR8400027 | Control-Root | 0.060 |