Gene detail information of Glyur000464s00022397.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57870.1 | 1.00E-64 | sumo conjugation enzyme 1 |
| NR | ACJ83979.1 | 2.61E-85 | unknown [Medicago truncatula] |
| COG | YP_008797956.1 | 1.00E-06 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| Swissprot | tr|Q42551|SCE1_ARATH | 1.00E-81 | SUMO-conjugating enzyme SCE1 |
| trEMBL | tr|B7FGV0|B7FGV0_MEDTR | 1.00E-85 | Uncharacterized protein {ECO:0000313|EMBL:AFK49507.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00464 | 57591 | 62084 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000464s00022397.1 | PF00179.21 | UQ_con | 21 | 122 | 3.20E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.068 |
| SRR1783600 | control | 71.744 |
| SRR1783602 | moderate drought stress | 62.451 |
| SRR1811619 | moderate drought stress | 63.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 72.605 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 68.896 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 64.750 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 62.940 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.583 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 65.981 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.774 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 163.895 |
| SRR2868004 | Drought Stress(Tissue:root) | 176.060 |
| SRR2967015 | Control (Tissue:root) | 169.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 189.119 |
| SRR9715740 | Leave | 138.131 |
| SRR9715741 | Leave | 190.788 |
| SRR9715739 | Root | 89.380 |
| SRR9715742 | Root | 104.241 |
| SRR9715743 | Root | 100.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 106.071 |
| SRR8749028 | MeJA induced 9h | 103.744 |
| SRR8749029 | MeJA induced 9h | 145.572 |
| SRR8749030 | Uninduced | 111.926 |
| SRR8749031 | Uninduced | 117.124 |
| SRR8749032 | Uninduced | 218.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 166.775 |
| SRR8400027 | Control-Root | 158.518 |