Gene detail information of Glyur000464s00022416.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67250.1 | 8.00E-157 | SKP1/ASK1-interacting protein 2 |
| NR | XP_003550997.1 | 0 | PREDICTED: F-box protein SKIP2-like [Glycine max] |
| Swissprot | tr|Q9FE83|SKIP2_ARATH | 0 | F-box protein SKIP2 |
| trEMBL | tr|I1MVT2|I1MVT2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G18380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00464 | 144706 | 146310 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000464s00022416.1 | PF12937.2 | F-box-like | 47 | 79 | 4.40E-06 |
| Glyur000464s00022416.1 | PF13516.1 | LRR_6 | 135 | 159 | 1.7 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.154 |
| SRR1783600 | control | 20.161 |
| SRR1783602 | moderate drought stress | 19.815 |
| SRR1811619 | moderate drought stress | 19.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 61.805 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 61.667 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.169 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.148 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 94.018 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 93.210 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.878 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.058 |
| SRR2868004 | Drought Stress(Tissue:root) | 60.418 |
| SRR2967015 | Control (Tissue:root) | 211.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 153.876 |
| SRR9715740 | Leave | 176.092 |
| SRR9715741 | Leave | 192.176 |
| SRR9715739 | Root | 1069.038 |
| SRR9715742 | Root | 496.923 |
| SRR9715743 | Root | 612.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.162 |
| SRR8749028 | MeJA induced 9h | 87.302 |
| SRR8749029 | MeJA induced 9h | 76.057 |
| SRR8749030 | Uninduced | 97.599 |
| SRR8749031 | Uninduced | 60.181 |
| SRR8749032 | Uninduced | 98.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 40.647 |
| SRR8400027 | Control-Root | 76.919 |