Gene detail information of Glyur000465s00024384.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38150.1 | 7.00E-108 | alpha 1,4-glycosyltransferase family protein |
| NR | XP_004492423.1 | 0 | PREDICTED: uncharacterized protein At4g19900-like [Cicer arietinum] |
| COG | YP_001831235.1 | 2.00E-07 | glycosyl transferase family protein [Beijerinckia indica subsp. indica ATCC 9039] |
| Swissprot | tr|P0C8Q4|Y4990_ARATH | 1.00E-39 | Uncharacterized protein At4g19900 |
| trEMBL | tr|G7KRB0|G7KRB0_MEDTR | 0 | Lactosylceramide 4-alpha-galactosyltransferase-like protein {ECO:0000313|EMBL:AES79452.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00465 | 60877 | 62163 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT32 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01988 | A4GALT | EC:2.4.1.228 | Glycosphingolipid biosynthesis - lacto and neolacto series | map00601 |
| Glycosphingolipid biosynthesis - globo and isoglobo series | map00603 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000465s00024384.1 | PF04488.10 | Gly_transf_sug | 160 | 282 | 7.70E-26 |
| Glyur000465s00024384.1 | PF04572.7 | Gb3_synth | 298 | 427 | 6.90E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.591 |
| SRR1783600 | control | 1.515 |
| SRR1783602 | moderate drought stress | 1.723 |
| SRR1811619 | moderate drought stress | 1.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.084 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.260 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.254 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.257 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.341 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.385 |
| SRR2967015 | Control (Tissue:root) | 27.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.026 |
| SRR9715740 | Leave | 0.067 |
| SRR9715741 | Leave | 0.070 |
| SRR9715739 | Root | 1.855 |
| SRR9715742 | Root | 1.020 |
| SRR9715743 | Root | 1.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.055 |
| SRR8749028 | MeJA induced 9h | 0.104 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.235 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.937 |
| SRR8400027 | Control-Root | 9.116 |