Gene detail

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Gene detail information of Glyur000466s00022897.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25830.1	1.00E-66	GATA transcription factor 12
NR	XP_004501147.1	6.10E-153	PREDICTED: GATA transcription factor 12-like [Cicer arietinum]
Swissprot	tr\|O82632\|GATA9_ARATH	1.00E-87	GATA transcription factor 9
trEMBL	tr\|I1K9E7\|I1K9E7_SOYBN	4.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G09080.1}

Sequence

Transcript Sequence

>Glyur000466s00022897.1
ATGGAGGCACAAGAGTTTTTCCACACCAGCTTCTGCCCACAATTCCCCTCCTCCGATGACATGACACCCACCACCACCACCAACGTCAACGCCGCCGCCGACCACTTCATCGTCGAGGACCTCTTCGACTTCTCCAACGACGACGACGCTGCCATCATTTCCGACCCAGCCTTTGACTCTCCCCCCGCAAACTCCACCACCACCACCGACGATTCTCCCCCCCTCGATAATACCACCACCACCAATTCCAATTTCCTCGCCGACATTTCCTGCCGGAATTCCGCCGATGGCCATTTCTCCAGCGACCTCTCCGTCCCGTATGATGATCTTGCGGAGCTGGAATGGCTTTCAAAATTCGCGGAGGAATCATTTTCGAGCGAGGACCTACAGAAGCTGCAGCTGATATCCGGAATGAAGGCGCAAAACGACGCCGCATCGCAAACCCGTGAAGAGCCCGCCGGCCCGGGAGTGTTCAACCCGCAAGTGTCTGTCCCGGCAAAGGCCCGAAGCAAGCGGACCCGTGGGCCCCCATGCAATTGGACCTCTCGCCTTCTCGTCCTATCCCCAACTACCACTACCACCACCACGCCCTCTCCCCATCACTCCTCCGACACCGCTGTCGCCGTCGCTCCCCCGAAGAAGCCCGCGCCGAGAAAGAGGGATAGCGGCGACGGAGGGGAGGGGCGAAAGTGCCTGCATTGCGCAACGGATAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCGAAGACGCTATGCAACGCGTGCGGGGTGAGGTACAAGTCGGGCCGGCTGGTGCCAGAGTACAGGCCCGCAGCGAGCCCAACATTCGTGCTGACTAAGCACTCAAACTCGCACCGCAAGGTGCTGGAGCTCAGGCGCCAGAAGGAGATGATGAGGGCCCAGCAACAGCAGTTGCTGCAGCTGCAGCAGCATCACCACCAGAACGTTATGTTCGATGTCCCATCATCCAACGGTGATGATTTCTTGATCCATCAACACGTGGGACCCGATTTCACGCACCTCATCTAGTACGCTGCTTACT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00466	48814	50436	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0045893 positive regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0008270 zinc ion binding GO:0043565 sequence-specific DNA binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000466s00022897.1	PF00320.22	GATA	231	265	3.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.700
SRR1783600	control	1.416
SRR1783602	moderate drought stress	1.315
SRR1811619	moderate drought stress	1.385

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.309
DRR006520	Root Summer glycyrrhizin high producing strain	0.205
DRR006521	Root Winter glycyrrhizin high producing strain	1.773
DRR006522	Root Winter glycyrrhizin high producing strain	1.578
DRR006523	Root Summer glycyrrhizin low producing strain	0.105
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.445
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.506

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	18.591
SRR2868004	Drought Stress(Tissue:root)	9.726
SRR2967015	Control (Tissue:root)	12.766

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.773
SRR9715740	Leave	0.455
SRR9715741	Leave	0.425
SRR9715739	Root	1.184
SRR9715742	Root	2.517
SRR9715743	Root	3.486

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.033
SRR8749028	MeJA induced 9h	1.662
SRR8749029	MeJA induced 9h	2.304
SRR8749030	Uninduced	0.338
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.115
SRR8400027	Control-Root	5.247