Gene detail information of Glyur000466s00022900.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G11620.14.00E-45SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related
NRXP_003603618.13.22E-116Mitogen-activated protein kinase kinase kinase [Medicago truncatula]
trEMBLtr|G7J3G2|G7J3G2_MEDTR1.00E-116SWIM zinc finger protein/MAP kinase kinase kinase (Mapkkk), putative {ECO:0000313|EMBL:AES73869.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004666346164207+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000466s00022900.1PF04434.12SWIM63924.50E-05
Glyur000466s00022900.1PF13639.1zf-RING_21602111.40E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.747
SRR1783600control3.559
SRR1783602moderate drought stress4.047
SRR1811619moderate drought stress3.930

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.116
DRR006520Root Summer glycyrrhizin high producing strain7.360
DRR006521Root Winter glycyrrhizin high producing strain2.832
DRR006522Root Winter glycyrrhizin high producing strain3.340
DRR006523Root Summer glycyrrhizin low producing strain8.279
DRR006524Root Summer glycyrrhizin low producing strain8.142
DRR006525Leaf Summer glycyrrhizin high producing strain8.863
DRR006526Leaf Summer glycyrrhizin high producing strain8.193

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.372
SRR2868004Drought Stress(Tissue:root)12.221
SRR2967015Control (Tissue:root)10.727

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.676
SRR9715740Leave13.063
SRR9715741Leave10.337
SRR9715739Root20.878
SRR9715742Root29.859
SRR9715743Root25.994

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.042
SRR8749028MeJA induced 9h32.668
SRR8749029MeJA induced 9h29.897
SRR8749030Uninduced10.394
SRR8749031Uninduced27.556
SRR8749032Uninduced36.216

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.497
SRR8400027Control-Root11.472

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved