Gene detail

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Gene detail information of Glyur000466s00022904.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32810.1	0	carotenoid cleavage dioxygenase 8
NR	XP_004501157.1	0	PREDICTED: carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like [Cicer arietinum]
COG	YP_001424409.1	3.00E-70	lignostilbene-alpha,beta-dioxygenase [Coxiella burnetii Dugway 5J108-111]
Swissprot	tr\|Q8LIY8\|CCD8B_ORYSJ	0	Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic (Precursor)
trEMBL	tr\|G7J3F4\|G7J3F4_MEDTR	0	Carotenoid cleavage dioxygenase {ECO:0000313\|EMBL:AES73861.1}

Sequence

Transcript Sequence

>Glyur000466s00022904.1
CCAATACCGTCCTATATATAAATGCATCATTCAGACTCATGCTTCCTCACTCAGAAAACTCCTATATATTTTAATTTCTTCTTCCATACTATTGTTTCTCCGATCCATATATAACTACACCCCTCAACACTCAGGGACTCCATNTCTATGGCTTTCATAGCTTCACAAGCTATCAGAAACTCCATTTCACGGCCTACAAATCAGGTTGTTTGTGATATGTCTGATAAAGGTTCCATGGACAGGTTTTCTTTTAAAAACAAGGGCATCTATAAAGGCCAACGCAATCTTCAAGATCATTTGACTGTGGCAAATGTTGCGAGCCCATTGCCTGTAATTGCTCCACCGCCGGAGGAANGGTCAGGGACCACCGGCGGCCGCCGGCATCATGTTGCATGGACTAGTATCCCACAAGAGAGATGGGAAGGAGAGCTTCTTGTTCAAGGACAAATACCATTGTGGCTGAAAGGAACGTACCTAAGGAATGGCCCGGGAATGTGGCACATAGGGGACTACAACTTCAGGCACCTCTTTGACGGCTACGCCACTCTGGTCAAGCTTCACATCGAGAATGGCCGGTTAATCGCCGGCCATCGGCAAATCGAGTCTCAAGCCTACCAAGCTGCAAAGAAGAATCGGAAGATATGTTACCGTGAGTTCTCAGAAGTGCCCAAGGCAGNGAATTTCCTGGCCTACATGGGGGAGCTTGCGAGCCTCTTCTCCGGCGCGTCGCTCACCGACAATGCGAACACCGGTGTGGTGAGGCTCGGTGATGGCAGGGTGGTATGCCTCACGGAGACCCAAAAAGGGTCCATAGTGATAGACCCGGACACGCTGGACACACTTGGGAAATTTGAGTACAGTGACTCATTGTGGGGTCTCATTCACTCCGCACACCCTATAGTGACGGACAAGGAGTTTTTGACGCTTCTCCCTGACCTTGTGAAGCCAGGGTACTTGGTGGTGAGGATGGAACCTGGCTCCAATGAGAGGCGGGTCATCGGTCGGGTCGATTGCCGGGGCGGGCCGTCACCCGGTTGGGTCCACTCCTTCCCTGTTACCGAACACTATGTCATAGTACCTGAGATGCCATTGAGGTACTGTGCTCAGAATTTGCTCAAGGCTGAACCCACTCCGTTGTACAAGTTTCAGTGGCACCCTGAGTCCAANGCTTTCATGCATGTTATGTGCAAGACTAGTGGAAACATTGTGGCAAGTGTGGAAGTGCCTCTGTTCGTTACTTTCCACTTCATAAATGCATATGAAGAGGAAGATGAGGATGGGAGGGTGACGGCAGTCATTGCTGACTGTTGTGAACACAATTCAAATACTTCCATTCTTGATAAGCTTAGATTACAGAACCTTCGCTCATATAATGGCCAAGATGTTCTACCAGATGCTAGGGTTGGTCGGTTCAGAATACCACTGGATGGAAGTCCATATGGAACACTAGAGGCAGCATTAGACCCAAATGAACATGGGAGGGGAATGGACATGTGCAGCATAAACCCGAATTATTTAGGGAAGAAATACAGATATGCTTATGCTTGTGGAGCTCGGCGCCCTTGTCACTTTCCCAACACTCTCACCAAGATTGATCTGGAATTAAAAAAGGCTAAGAACTGGTATGATGAAGGTGCTATTCCCTCAGAACCATTCTTTGTGGCTCGACCAGGAGCAACAGAGGAAGACGATGGTGTTGTAATTTCCATAGTCAGTGACAAAAATGGAGGAGGATATGCGTTGTTGTTGGATGGTTCCACGTTTGAGGAGGTGGCTAGGGCCAAGTTCCCTTATGGACTTCCATATGGGTTGCATGGGTGCTGGGTTCCAAAACAGTAACAGTACATATATGACTAAAGACTGTCATTATCACAGTGGGAAATCTGCACAGAGAAAACAGTGCAACTACTTGCAAGCACTGCAACTCTAATATATTGGCAATTTCTGTGGTACCCTGAAAAATATAAGGATTTGGAATATATTACTACAGCTATATACGAGTGCAAGCTGAGGGATCCATAATGTAAATAAAATATGTGTATGATAAAGTAGCAATTACAGATATACGGCATTTTATTATTATCATTCATGTATAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00466	86308	90088	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17913	CCD8	EC:1.13.11.69 1.13.11.70	Carotenoid biosynthesis	map00906

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000466s00022904.1	PF03055.10	RPE65	82	562	2.20E-107

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.756
SRR1783600	control	5.675
SRR1783602	moderate drought stress	2.785
SRR1811619	moderate drought stress	2.814

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.782
DRR006520	Root Summer glycyrrhizin high producing strain	15.633
DRR006521	Root Winter glycyrrhizin high producing strain	0.699
DRR006522	Root Winter glycyrrhizin high producing strain	0.736
DRR006523	Root Summer glycyrrhizin low producing strain	24.716
DRR006524	Root Summer glycyrrhizin low producing strain	24.567
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.430
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.495

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	60.188
SRR2868004	Drought Stress(Tissue:root)	114.839
SRR2967015	Control (Tissue:root)	28.665

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.110
SRR9715740	Leave	0.137
SRR9715741	Leave	0.142
SRR9715739	Root	4.674
SRR9715742	Root	18.581
SRR9715743	Root	15.111

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.022
SRR8749028	MeJA induced 9h	0.087
SRR8749029	MeJA induced 9h	0.105
SRR8749030	Uninduced	0.045
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	11.578
SRR8400027	Control-Root	12.629