Gene detail information of Glyur000467s00022308.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G42880.1 | 7.00E-159 | Leucine-rich repeat protein kinase family protein |
| NR | KEH18496.1 | 0 | receptor-like kinase, putative [Medicago truncatula] |
| COG | YP_004429344.1 | 9.00E-19 | leucine-rich repeat-containing protein [Krokinobacter sp. 4H-3-7-5] |
| Swissprot | tr|Q3E991|Y5269_ARATH | 0 | Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 (Precursor) |
| trEMBL | tr|A0A072TMR8|A0A072TMR8_MEDTR | 0 | Receptor-like kinase, putative {ECO:0000313|EMBL:KEH18496.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00467 | 1489 | 3975 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.13.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000467s00022308.1 | PF08263.7 | LRRNT_2 | 41 | 81 | 6.70E-09 |
| Glyur000467s00022308.1 | PF13855.1 | LRR_8 | 134 | 192 | 1.90E-07 |
| Glyur000467s00022308.1 | PF13516.1 | LRR_6 | 203 | 224 | 0.23 |
| Glyur000467s00022308.1 | PF00069.20 | Pkinase | 386 | 649 | 1.10E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.018 |
| SRR1783600 | control | 0.018 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.010 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.001 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.011 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.001 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.001 |
| SRR8749029 | MeJA induced 9h | 0.003 |
| SRR8749030 | Uninduced | 0.038 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |