Gene detail information of Glyur000467s00022333.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17420.10lipoxygenase 3
NRCAC43237.10lipoxygenase [Sesbania rostrata]
Swissprottr|O24371|LOX31_SOLTU0Linoleate 13S-lipoxygenase 3-1, chloroplastic (Precursor)
trEMBLtr|Q93YA9|Q93YA9_SESRO0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00467129525135557+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000467s00022333.2PF01477.18PLAT2052937.50E-15
Glyur000467s00022333.2PF00305.14Lipoxygenase3057036.80E-135
Glyur000467s00022333.2PF00305.14Lipoxygenase7039362.60E-84


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control68.585
SRR1783600control68.493
SRR1783602moderate drought stress83.404
SRR1811619moderate drought stress81.889

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain120.798
DRR006520Root Summer glycyrrhizin high producing strain119.349
DRR006521Root Winter glycyrrhizin high producing strain49.709
DRR006522Root Winter glycyrrhizin high producing strain48.498
DRR006523Root Summer glycyrrhizin low producing strain106.009
DRR006524Root Summer glycyrrhizin low producing strain106.184
DRR006525Leaf Summer glycyrrhizin high producing strain19.361
DRR006526Leaf Summer glycyrrhizin high producing strain18.956

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)68.498
SRR2868004Drought Stress(Tissue:root)118.628
SRR2967015Control (Tissue:root)58.113

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave153.744
SRR9715740Leave133.505
SRR9715741Leave248.038
SRR9715739Root71.147
SRR9715742Root320.684
SRR9715743Root267.070

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h93.731
SRR8749028MeJA induced 9h132.673
SRR8749029MeJA induced 9h136.207
SRR8749030Uninduced391.521
SRR8749031Uninduced215.347
SRR8749032Uninduced145.170

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root102.413
SRR8400027Control-Root112.252

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved