Gene detail information of Glyur000468s00019628.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30933.1 | 9.00E-31 | Carbohydrate-binding X8 domain superfamily protein |
| NR | XP_006586068.1 | 8.88E-119 | PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Glycine max] |
| Swissprot | tr|Q9M069|E137_ARATH | 1.00E-25 | Glucan endo-1,3-beta-glucosidase 7 (Precursor) |
| trEMBL | tr|I1KY13|I1KY13_SOYBN | 3.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G42200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00468 | 58041 | 61216 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000468s00019628.1 | PF07983.8 | X8 | 108 | 177 | 6.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.172 |
| SRR1783600 | control | 10.642 |
| SRR1783602 | moderate drought stress | 4.585 |
| SRR1811619 | moderate drought stress | 4.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.076 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.730 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.992 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.701 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.659 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.010 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.901 |
| SRR2967015 | Control (Tissue:root) | 6.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.597 |
| SRR9715740 | Leave | 0.618 |
| SRR9715741 | Leave | 0.242 |
| SRR9715739 | Root | 0.592 |
| SRR9715742 | Root | 0.580 |
| SRR9715743 | Root | 0.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.511 |
| SRR8749028 | MeJA induced 9h | 0.114 |
| SRR8749029 | MeJA induced 9h | 0.103 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.290 |
| SRR8400027 | Control-Root | 11.856 |