Gene detail information of Glyur000468s00019638.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52630.1 | 0 | O-fucosyltransferase family protein |
| NR | KHN01340.1 | 0 | DUF246 domain-containing protein [Glycine soja] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 4.00E-38 | Uncharacterized protein At1g04910 |
| trEMBL | tr|A0A072UG18|A0A072UG18_MEDTR | 0 | GDP-fucose protein O-fucosyltransferase {ECO:0000313|EMBL:KEH28694.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00468 | 104357 | 107553 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000468s00019638.2 | PF10250.4 | O-FucT | 82 | 405 | 6.20E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.242 |
| SRR1783600 | control | 8.430 |
| SRR1783602 | moderate drought stress | 8.470 |
| SRR1811619 | moderate drought stress | 8.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.561 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.872 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.277 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.005 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.966 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.654 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.310 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.315 |
| SRR2967015 | Control (Tissue:root) | 11.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.587 |
| SRR9715740 | Leave | 7.656 |
| SRR9715741 | Leave | 9.240 |
| SRR9715739 | Root | 1.394 |
| SRR9715742 | Root | 4.287 |
| SRR9715743 | Root | 3.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.597 |
| SRR8749028 | MeJA induced 9h | 19.027 |
| SRR8749029 | MeJA induced 9h | 13.979 |
| SRR8749030 | Uninduced | 14.332 |
| SRR8749031 | Uninduced | 7.846 |
| SRR8749032 | Uninduced | 6.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.035 |
| SRR8400027 | Control-Root | 13.432 |