Gene detail information of Glyur000468s00019641.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G11170.10DEAD/DEAH box RNA helicase family protein
NRXP_004506912.10PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Cicer arietinum]
COGYP_925783.12.00E-68DEAD/DEAH box helicase [Nocardioides sp. JS614]
Swissprottr|Q9LFN6|RH56_ARATH0DEAD-box ATP-dependent RNA helicase 56
trEMBLtr|I1KVD4|I1KVD4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G22570.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00468130144136126+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12812UAP56, BAT1, SUB2 EC:3.6.4.13 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015
Influenza Amap05164


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000468s00019641.1PF00270.24DEAD942589.30E-36
Glyur000468s00019641.1PF00271.26Helicase_C3294051.40E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.792
SRR1783600control39.859
SRR1783602moderate drought stress43.380
SRR1811619moderate drought stress43.449

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain45.344
DRR006520Root Summer glycyrrhizin high producing strain45.030
DRR006521Root Winter glycyrrhizin high producing strain87.569
DRR006522Root Winter glycyrrhizin high producing strain84.611
DRR006523Root Summer glycyrrhizin low producing strain43.365
DRR006524Root Summer glycyrrhizin low producing strain42.733
DRR006525Leaf Summer glycyrrhizin high producing strain35.514
DRR006526Leaf Summer glycyrrhizin high producing strain35.096

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)89.104
SRR2868004Drought Stress(Tissue:root)65.265
SRR2967015Control (Tissue:root)64.737

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave51.841
SRR9715740Leave64.598
SRR9715741Leave56.819
SRR9715739Root7.743
SRR9715742Root30.504
SRR9715743Root25.049

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h186.437
SRR8749028MeJA induced 9h149.579
SRR8749029MeJA induced 9h154.203
SRR8749030Uninduced97.580
SRR8749031Uninduced112.293
SRR8749032Uninduced89.243

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root63.458
SRR8400027Control-Root54.134

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved