Gene detail information of Glyur000470s00020962.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12670.10CTP synthase family protein
NRXP_007133466.10hypothetical protein PHAVU_011G180900g [Phaseolus vulgaris]
COGYP_003483162.10CTP synthase [Aciduliprofundum boonei T469]
trEMBLtr|V7AMU6|V7AMU6_PHAVU0CTP synthase {ECO:0000256|RuleBase:RU810713}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00470128509135893+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01937pyrG, CTPS EC:6.3.4.2 Pyrimidine metabolism map00240


Gene Ontology

biological_process

GO:0006221  pyrimidine nucleotide biosynthetic process


molecular_function

GO:0003883  CTP synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000470s00020962.1PF06418.9CTP_synth_N12843.20E-125
Glyur000470s00020962.1PF00117.23GATase3095441.30E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.621
SRR1783600control4.705
SRR1783602moderate drought stress16.175
SRR1811619moderate drought stress15.922

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.130
DRR006520Root Summer glycyrrhizin high producing strain5.021
DRR006521Root Winter glycyrrhizin high producing strain1.659
DRR006522Root Winter glycyrrhizin high producing strain1.584
DRR006523Root Summer glycyrrhizin low producing strain5.965
DRR006524Root Summer glycyrrhizin low producing strain5.254
DRR006525Leaf Summer glycyrrhizin high producing strain1.464
DRR006526Leaf Summer glycyrrhizin high producing strain1.455

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.737
SRR2868004Drought Stress(Tissue:root)7.855
SRR2967015Control (Tissue:root)9.328

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.473
SRR9715740Leave0.851
SRR9715741Leave0.940
SRR9715739Root3.374
SRR9715742Root6.180
SRR9715743Root6.264

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.461
SRR8749028MeJA induced 9h14.142
SRR8749029MeJA induced 9h14.752
SRR8749030Uninduced2.326
SRR8749031Uninduced0.997
SRR8749032Uninduced2.657

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.962
SRR8400027Control-Root7.319

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved