Gene detail

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Gene detail information of Glyur000470s00020966.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12710.1	4.00E-98	DNA glycosylase superfamily protein
NR	XP_007133461.1	0	hypothetical protein PHAVU_011G180500g [Phaseolus vulgaris]
COG	YP_005441838.1	4.00E-57	3-methyladenine DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC 104270]
trEMBL	tr\|V7AJL3\|V7AJL3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW05455.1}

Sequence

Transcript Sequence

>Glyur000470s00020966.1
ATGTGCAGCTCCAAGGCCAAAGTGACTCTAGGCTTAGAAGCCACATATCCTGTGGCCAGAATCAATGGCAGGCCTGTCCTTCAACCAACTTGTAACCGAGTTCCTAACCTTGAGAGGAGAAACTCAATCAAGAAAGTGTNACCAAAGTCACTTTCATCACTACCATCACCACAACCACTTCTCCCAAACAAGACTTCATTGACACCTCCACTTTCTCCAAAGCCAAAGTCCCTAAGGCCTCTACCAATAAAGAGAGGCAACAATGACAGTAACAATGGGCTGAACACAAGTTCTGAGAAGATTGCAATAACCCCAAGAAACTCCACAACAAAACCACCAACAACTCTAGAGAGGAAGAAATCCAAGAGTTTCAAGGGTATTGGTTCCATTGGTTCTGGCCTTTCTTCTGCTGCTTCTTCTATTGAGGCATCACTGAGTTACTCTTCCAGTTTGATCACTGATTCACCAGGGAGCATAGCTGCTGTGAGGAGAGAACAGATGGCACTGCAGCANGCACAGAGGAAAATGAAGATTGCCCATTATGGAAGATCAAAGTCTGCAAAGTTTGAAAGTGTTGTTGTTCCTCTTGACCACTCCTTAAGCAATCTTACATCAAAGGCAAATCCCATCTATGTTGCTTATCATGATGAGGAATGGGGAGTTCCAGTTCATGATGACAAGATGTTGTTTGAACTTCTAGTTTTAAGTGGTGCTCAGGTTGGATCTGATTGGACATCAATCTTGAAGAAACGCCAAGATTTCAGGACTGCATTTTCAGAATTTGATGCAGCAACTGTGGCCAACTTGACTGATAAGCAAATGATGTCTATTAGTTTGGAATATAGCATTGATATAAGCAGAGTTCGAGGAGTTGTTGATAATGCTAACCGAATTCTAGAGATTAACAAGGACTTTGGTTCATTTGACAAGTACATCTGGGGTTTTGTGAATCATAAACCCATCTCCACACAATACAAGTTCGGCCACAAGATCCCAGTGAAGACATCAAAATCAGAGAGCATAAGCAAAGACATGATCAGAAGGGGGTTTAGGTTTGTGGGCCCCACAGTGCTTCATTCGTTTATGCAAGCAGCTGGCCTCACCAATGACCACTTGATCACTTGCCACAGGCACTTGCAATGCACCATAGCATAGAGCCCTCTCTAATAGAATCCAATTTCAACTGAGAAACGAGAAATTGAACAAGAGCATGTATAATGAATGTGCTTGCTAACTATATAGTTCACTTTCAGTTAATCCGTTGTGTATAATATTAGATCATAGGAACTAAGGAAAAAAGGGGTTTTCTTATTTGTGAGTTGTCG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00470	153798	156124	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01246	tag	EC:3.2.2.20	Base excision repair	map03410

Gene Ontology

biological_process

GO:0006281 DNA repair

GO:0006284 base-excision repair

molecular_function GO:0003824 catalytic activity GO:0008725 DNA-3-methyladenine glycosylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000470s00020966.1	PF03352.8	Adenine_glyco	207	378	3.20E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.679
SRR1783600	control	0.691
SRR1783602	moderate drought stress	0.873
SRR1811619	moderate drought stress	0.816

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.654
DRR006520	Root Summer glycyrrhizin high producing strain	0.579
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.818
DRR006524	Root Summer glycyrrhizin low producing strain	0.626
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.238
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.462

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.556
SRR2868004	Drought Stress(Tissue:root)	8.573
SRR2967015	Control (Tissue:root)	8.790

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.285
SRR9715740	Leave	18.010
SRR9715741	Leave	17.642
SRR9715739	Root	0.300
SRR9715742	Root	0.966
SRR9715743	Root	0.488

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.177
SRR8749028	MeJA induced 9h	7.137
SRR8749029	MeJA induced 9h	2.437
SRR8749030	Uninduced	0.488
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.086

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.954
SRR8400027	Control-Root	1.846