Gene detail information of Glyur000471s00019769.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G03110.11.00E-135Transducin/WD40 repeat-like superfamily protein
NRXP_004493690.10PREDICTED: tRNA (guanine-N(7)-)-methyltransferase subunit WDR4-like [Cicer arietinum]
COGYP_724070.11.00E-16WD-40 repeat-containing protein [Trichodesmium erythraeum IMS101]
trEMBLtr|A0A072UD69|A0A072UD69_MEDTR0tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit {ECO:0000256|HAMAP-Rule:MF_03056}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004714191444677+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0036265  RNA (guanine-N7)-methylation


molecular_function

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000471s00019769.1PF00400.27WD4065943.50E-06
Glyur000471s00019769.1PF00400.27WD401551800.00064
Glyur000471s00019769.1PF00400.27WD401982343.30E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.791
SRR1783600control11.957
SRR1783602moderate drought stress13.609
SRR1811619moderate drought stress13.546

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.420
DRR006520Root Summer glycyrrhizin high producing strain16.535
DRR006521Root Winter glycyrrhizin high producing strain26.371
DRR006522Root Winter glycyrrhizin high producing strain25.735
DRR006523Root Summer glycyrrhizin low producing strain17.229
DRR006524Root Summer glycyrrhizin low producing strain17.867
DRR006525Leaf Summer glycyrrhizin high producing strain8.641
DRR006526Leaf Summer glycyrrhizin high producing strain8.729

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.621
SRR2868004Drought Stress(Tissue:root)19.775
SRR2967015Control (Tissue:root)16.915

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.723
SRR9715740Leave10.925
SRR9715741Leave10.340
SRR9715739Root6.142
SRR9715742Root8.337
SRR9715743Root8.983

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.203
SRR8749028MeJA induced 9h20.786
SRR8749029MeJA induced 9h18.862
SRR8749030Uninduced10.573
SRR8749031Uninduced4.669
SRR8749032Uninduced7.173

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.470
SRR8400027Control-Root17.560

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved