Gene detail information of Glyur000471s00019779.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G26370.10RNA helicase family protein
NRXP_004493676.10PREDICTED: ATP-dependent RNA helicase DHX8-like isoform X1 [Cicer arietinum]
COGYP_003548378.15.00E-104ATP-dependent helicase HrpA [Coraliomargarita akajimensis DSM 45221]
Swissprottr|Q38953|DHX8_ARATH3.00E-180Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|K7K7U5|K7K7U5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G13171.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004718669892847+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12818DHX8, PRP22 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000471s00019779.1PF00271.26Helicase_C3314171.40E-13
Glyur000471s00019779.1PF07717.11OB_NTP_bind5766734.50E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.381
SRR1783600control12.569
SRR1783602moderate drought stress9.898
SRR1811619moderate drought stress9.932

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.751
DRR006520Root Summer glycyrrhizin high producing strain8.609
DRR006521Root Winter glycyrrhizin high producing strain2.956
DRR006522Root Winter glycyrrhizin high producing strain3.002
DRR006523Root Summer glycyrrhizin low producing strain8.929
DRR006524Root Summer glycyrrhizin low producing strain8.844
DRR006525Leaf Summer glycyrrhizin high producing strain4.519
DRR006526Leaf Summer glycyrrhizin high producing strain4.653

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.626
SRR2868004Drought Stress(Tissue:root)7.807
SRR2967015Control (Tissue:root)9.029

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.756
SRR9715740Leave8.182
SRR9715741Leave5.220
SRR9715739Root1.720
SRR9715742Root6.890
SRR9715743Root5.128

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.427
SRR8749028MeJA induced 9h3.730
SRR8749029MeJA induced 9h3.331
SRR8749030Uninduced1.364
SRR8749031Uninduced0.371
SRR8749032Uninduced0.961

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.707
SRR8400027Control-Root11.447

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved