Gene detail information of Glyur000472s00019574.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47410.10WD40/YVTN repeat-like-containing domain;Bromodomain
NRXP_006574532.10PREDICTED: bromodomain and WD repeat-containing protein 3-like isoform X2 [Glycine max]
COGYP_003887875.14.00E-29WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprottr|Q3Y8L7|DAW1_CHLRE9.00E-20Dynein assembly factor with WDR repeat domains 1
trEMBLtr|I1JBG5|I1JBG5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G01620.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004722421437705+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000472s00019574.1PF00400.27WD403043398.50E-08
Glyur000472s00019574.1PF00400.27WD403453806.50E-07
Glyur000472s00019574.1PF00400.27WD403874264.40E-10
Glyur000472s00019574.1PF00400.27WD404664920.0027
Glyur000472s00019574.1PF00400.27WD405115680.11
Glyur000472s00019574.1PF00400.27WD406546920.022


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.479
SRR1783600control9.464
SRR1783602moderate drought stress10.800
SRR1811619moderate drought stress10.847

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.952
DRR006520Root Summer glycyrrhizin high producing strain7.712
DRR006521Root Winter glycyrrhizin high producing strain6.834
DRR006522Root Winter glycyrrhizin high producing strain6.645
DRR006523Root Summer glycyrrhizin low producing strain8.687
DRR006524Root Summer glycyrrhizin low producing strain8.582
DRR006525Leaf Summer glycyrrhizin high producing strain8.253
DRR006526Leaf Summer glycyrrhizin high producing strain8.167

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.609
SRR2868004Drought Stress(Tissue:root)22.091
SRR2967015Control (Tissue:root)20.057

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.394
SRR9715740Leave14.302
SRR9715741Leave16.243
SRR9715739Root0.795
SRR9715742Root10.023
SRR9715743Root9.190

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.480
SRR8749028MeJA induced 9h9.447
SRR8749029MeJA induced 9h3.688
SRR8749030Uninduced6.757
SRR8749031Uninduced7.167
SRR8749032Uninduced3.847

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.360
SRR8400027Control-Root16.336

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved