Gene detail information of Glyur000472s00019577.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02610.1 | 8.00E-51 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | AFK46834.1 | 1.28E-125 | unknown [Lotus japonicus] |
| Swissprot | tr|F4JKK0|SUD1_ARATH | 2.00E-09 | Probable E3 ubiquitin ligase SUD1 |
| trEMBL | tr|I3T2U2|I3T2U2_LOTJA | 5.00E-126 | Uncharacterized protein {ECO:0000313|EMBL:AFK46834.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00472 | 50409 | 53215 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000472s00019577.1 | PF12906.2 | RINGv | 20 | 67 | 3.60E-14 |
| Glyur000472s00019577.1 | PF12428.3 | DUF3675 | 73 | 189 | 2.80E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.566 |
| SRR1783600 | control | 2.482 |
| SRR1783602 | moderate drought stress | 1.574 |
| SRR1811619 | moderate drought stress | 1.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.348 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.895 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.827 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.764 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.744 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.175 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.394 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.642 |
| SRR2967015 | Control (Tissue:root) | 4.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.830 |
| SRR9715740 | Leave | 1.723 |
| SRR9715741 | Leave | 3.992 |
| SRR9715739 | Root | 0.220 |
| SRR9715742 | Root | 1.149 |
| SRR9715743 | Root | 0.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.103 |
| SRR8749028 | MeJA induced 9h | 20.440 |
| SRR8749029 | MeJA induced 9h | 40.144 |
| SRR8749030 | Uninduced | 12.792 |
| SRR8749031 | Uninduced | 31.013 |
| SRR8749032 | Uninduced | 34.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.182 |
| SRR8400027 | Control-Root | 11.518 |