Gene detail information of Glyur000472s00019593.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49330.1 | 9.00E-62 | myb domain protein 111 |
| NR | ABR28345.1 | 1.71E-115 | MYB transcription factor MYB112 [Medicago truncatula] |
| Swissprot | tr|O22264|MYB12_ARATH | 1.00E-72 | Transcription factor MYB12 |
| trEMBL | tr|D5FFI0|D5FFI0_MEDTR | 6.00E-116 | MYB transcription factor MYB112 {ECO:0000313|EMBL:ABR28345.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00472 | 135729 | 139965 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000472s00019593.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 8.70E-15 |
| Glyur000472s00019593.1 | PF00249.26 | Myb_DNA-binding | 67 | 112 | 3.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.027 |
| SRR1783600 | control | 0.027 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.166 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.695 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.221 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.037 |
| SRR2967015 | Control (Tissue:root) | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.385 |
| SRR9715740 | Leave | 6.484 |
| SRR9715741 | Leave | 2.025 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.046 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.250 |
| SRR8400027 | Control-Root | 0.088 |