Gene detail information of Glyur000473s00018939.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G14780.12.00E-142formate dehydrogenase
NRCAR98204.10formate dehydrogenase [Lotus japonicus]
COGYP_001939975.19.00E-101formate dehydrogenase [Methylacidiphilum infernorum V4]
Swissprottr|Q9SXP2|FDH1_ORYSJ0Formate dehydrogenase 1, mitochondrial (Precursor)
trEMBLtr|B6VPZ9|B6VPZ9_LOTJA0Formate dehydrogenase {ECO:0000313|EMBL:CAR98204.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004732485741643+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00122FDH EC:1.2.1.2 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000473s00018939.2PF00389.252-Hacid_dh773741.30E-13
Glyur000473s00018939.2PF02826.142-Hacid_dh_C1703484.40E-47
Glyur000473s00018939.2PF00389.252-Hacid_dh4555445.20E-12
Glyur000473s00018939.2PF02826.142-Hacid_dh_C5487018.80E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.457
SRR1783600control15.099
SRR1783602moderate drought stress13.967
SRR1811619moderate drought stress13.863

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.612
DRR006520Root Summer glycyrrhizin high producing strain24.190
DRR006521Root Winter glycyrrhizin high producing strain11.909
DRR006522Root Winter glycyrrhizin high producing strain11.579
DRR006523Root Summer glycyrrhizin low producing strain25.085
DRR006524Root Summer glycyrrhizin low producing strain25.016
DRR006525Leaf Summer glycyrrhizin high producing strain16.484
DRR006526Leaf Summer glycyrrhizin high producing strain15.538

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.885
SRR2868004Drought Stress(Tissue:root)66.284
SRR2967015Control (Tissue:root)67.197

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave64.804
SRR9715740Leave31.955
SRR9715741Leave99.727
SRR9715739Root47.329
SRR9715742Root71.675
SRR9715743Root67.827

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.544
SRR8749028MeJA induced 9h106.752
SRR8749029MeJA induced 9h37.798
SRR8749030Uninduced201.348
SRR8749031Uninduced139.002
SRR8749032Uninduced103.557

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root73.777
SRR8400027Control-Root61.225

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved