Gene detail information of Glyur000473s00018947.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G01470.13.00E-68homeobox 1
NRXP_004489298.11.07E-158PREDICTED: homeobox-leucine zipper protein HAT5-like [Cicer arietinum]
Swissprottr|Q02283|HAT5_ARATH7.00E-95Homeobox-leucine zipper protein HAT5
trEMBLtr|A0A072U6Z4|A0A072U6Z4_MEDTR6.00E-159Homeobox associated leucine zipper protein {ECO:0000313|EMBL:KEH24863.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00473113091116964+


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000473s00018947.1PF00046.24Homeobox711244.30E-18
Glyur000473s00018947.1PF02183.13HALZ1261693.10E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.181
SRR1783600control29.270
SRR1783602moderate drought stress22.287
SRR1811619moderate drought stress22.040

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain67.323
DRR006520Root Summer glycyrrhizin high producing strain67.122
DRR006521Root Winter glycyrrhizin high producing strain7.128
DRR006522Root Winter glycyrrhizin high producing strain7.046
DRR006523Root Summer glycyrrhizin low producing strain65.443
DRR006524Root Summer glycyrrhizin low producing strain65.791
DRR006525Leaf Summer glycyrrhizin high producing strain142.560
DRR006526Leaf Summer glycyrrhizin high producing strain141.842

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)294.041
SRR2868004Drought Stress(Tissue:root)393.526
SRR2967015Control (Tissue:root)348.154

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave165.424
SRR9715740Leave127.826
SRR9715741Leave165.370
SRR9715739Root12.818
SRR9715742Root51.617
SRR9715743Root42.426

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h58.483
SRR8749028MeJA induced 9h171.270
SRR8749029MeJA induced 9h70.941
SRR8749030Uninduced25.114
SRR8749031Uninduced8.277
SRR8749032Uninduced16.194

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root163.032
SRR8400027Control-Root167.911

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved