Gene detail information of Glyur000473s00018949.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01460.1 | 0 | methyl-CPG-binding domain 9 |
| NR | XP_004489317.1 | 0 | PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cicer arietinum] |
| Swissprot | tr|Q9SGH2|MBD9_ARATH | 0 | Methyl-CpG-binding domain-containing protein 9 |
| trEMBL | tr|I1M022|I1M022_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G23910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00473 | 118520 | 130705 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
| EAR motif-containing Proteins | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000473s00018949.1 | PF01429.14 | MBD | 442 | 495 | 1.40E-10 |
| Glyur000473s00018949.1 | PF00439.20 | Bromodomain | 1359 | 1413 | 4.20E-05 |
| Glyur000473s00018949.1 | PF00628.24 | PHD | 1470 | 1516 | 7.40E-12 |
| Glyur000473s00018949.1 | PF15612.1 | WHIM1 | 1560 | 1598 | 0.00019 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.586 |
| SRR1783600 | control | 5.576 |
| SRR1783602 | moderate drought stress | 5.568 |
| SRR1811619 | moderate drought stress | 5.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.142 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.097 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.142 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.995 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.174 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.103 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.432 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.095 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.690 |
| SRR2967015 | Control (Tissue:root) | 10.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.992 |
| SRR9715740 | Leave | 4.344 |
| SRR9715741 | Leave | 5.884 |
| SRR9715739 | Root | 1.207 |
| SRR9715742 | Root | 10.818 |
| SRR9715743 | Root | 10.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.642 |
| SRR8749028 | MeJA induced 9h | 5.274 |
| SRR8749029 | MeJA induced 9h | 1.328 |
| SRR8749030 | Uninduced | 1.911 |
| SRR8749031 | Uninduced | 2.233 |
| SRR8749032 | Uninduced | 1.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.957 |
| SRR8400027 | Control-Root | 8.468 |