Gene detail information of Glyur000473s00018952.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48030.1 | 1.00E-15 | hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein |
| NR | XP_007151096.1 | 5.69E-59 | hypothetical protein PHAVU_004G017700g [Phaseolus vulgaris] |
| Swissprot | tr|Q7X843|ATL48_ARATH | 3.00E-18 | RING-H2 finger protein ATL48 |
| trEMBL | tr|V7C1B2|V7C1B2_PHAVU | 2.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:ESW23090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00473 | 146082 | 146561 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000473s00018952.1 | PF13639.1 | zf-RING_2 | 39 | 82 | 7.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.947 |
| SRR1783600 | control | 7.435 |
| SRR1783602 | moderate drought stress | 4.546 |
| SRR1811619 | moderate drought stress | 4.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.295 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.480 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.227 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.983 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.692 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.775 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.446 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.711 |
| SRR2967015 | Control (Tissue:root) | 11.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.235 |
| SRR9715740 | Leave | 0.115 |
| SRR9715741 | Leave | 0.186 |
| SRR9715739 | Root | 0.590 |
| SRR9715742 | Root | 1.198 |
| SRR9715743 | Root | 1.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.140 |
| SRR8749029 | MeJA induced 9h | 0.006 |
| SRR8749030 | Uninduced | 0.133 |
| SRR8749031 | Uninduced | 0.096 |
| SRR8749032 | Uninduced | 0.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.102 |
| SRR8400027 | Control-Root | 9.020 |