Gene detail

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Gene detail information of Glyur000473s00018955.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18500.2	2.00E-40	Protein kinase superfamily protein
NR	XP_006604952.1	0	PREDICTED: probable receptor-like protein kinase At5g18500-like [Glycine max]
COG	YP_002759750.1	6.00E-18	putative protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|Q8L4H4\|NORK_MEDTR	8.00E-49	Nodulation receptor kinase (Precursor)
trEMBL	tr\|K7MVV6\|K7MVV6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G01381.1}

Sequence

Transcript Sequence

>Glyur000473s00018955.1
ATGGCTTTATGGATTTGGAAAAGAAATGTGTTTCCAACATCCATCTTGATTGTTTGCATCTTCATTCTGATCACCACTACAAAATTTTCAACTTCCTTGGCTCTGGAGGCAGGATGCAGCCTTAGAATTCAGCTTTCACCACTGTTGAATCATTCAAGCTGTGGAGCAGCATTTGATGCTTACCTCTATGCACTTGGTCAGCATGCAAATCTAACAGGCAAGGTTTTCTTGGATTCTACTGAACAAAGGATTTGTCTATCTAGAATAATAAAGGGTTTTAATAAAGATGATATTTTTGGTGGTTGTGGAATTGAGAGCCTAACAAGTGGTGCTGGTGCTGGTGCTGGTGGATGTTCTGACTTCTTGGTTGCTGATGTTAGGAATAAATTAGGAAATGAGATTANAAGTTTAGATGAAAACTGTCAACTTGAGACTACTTCAGGTAACAAGTGGGAATTACAATCATGTCCTTCCTGCCTAAAGACATGGAAATCCATAGGAGAGACTGATTCCAGAAAGACTGAAGCTGATCTTTGTAGAATTGCTGTACTTGTGACATTGATAAGCAGCAAAATTGAAAATGAGATTTATGTCCACACAGTGCTGAGATGTCTTGGAGCACAACATATNTATNCAGGTATATGGATTCTGACTGGAGTAACAATAGGGGTTATTTTGATAACAGTTATCATCACTTCATACATCATGTTTCGTAGATACTTTAGATCAGCCCCACCAAGATATGAAGTGACATTTGGAGACATGTTAAAGAAAACTTCTTGTCCAAGAATTCCTATCAAGGAAGTGTATGCTGCCACCAACCATCTCAATGAAATGAATATCATTGGGGAAGGAACTGCAGGTAAGGTCTATAAAGGCACAATGACAAATAATCAGCAAGTTGCAGTAAAGCACATAATCAATGATGATGGAAATATGGAGACTTTTGTCAGAGAAGTGACAAGCCTATCTCATGTCAGGCACCCAAATCTTGTTGCTTTGCTTGGTTTCTGTATTGAAGGAGATGAATGTTTTCTTGTCTATGAACTATGTCCCAATGGGAGTCTTTCAGAGTGGCTATTTGGCAAGAACAAGGTGCTGTCCTGGATACAGAGGCTGGAAATTGCAATTGATAGTGCTAGAGGTCTTTGGTTTTTGCACACATATCCAGGAGGATGCATTGTTCACCGTGACATCAAGGTGGGTGAAACATATGTTAGTTCAGAAGTGAGAGGAACTTTTGGATATATGGATCCTGAGTACCAAAGCAACCGCCATGTGAATTCATCTGGTGATGTTTACAGCTTTGGCATGGTACTTCTGCAAATCCTCTCTGGAAAGAAGGTCATAAATTTGAAACTGAAGAGACCAATACTTCAAGGAGAGTACTCTGAGGAAGCATTTGATTTTACACTTAGGCTGGCTCTTTCATGCACAGCCCTCAACCAACAACGCCCCTCCATGGAGCAGGTTGTCAAAAGACTAGAAGAGGCCTTGTTAATTTCAAAAGGGAGGAAGGTTTCTACTACAGAAACTCCAGCAGACAATATTTCTAATGATCCATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00473	155433	159066	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000473s00018955.1	PF07714.12	Pkinase_Tyr	279	400	2.10E-23
Glyur000473s00018955.1	PF00069.20	Pkinase	407	451	0.00017

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.193
SRR1783600	control	0.166
SRR1783602	moderate drought stress	0.327
SRR1811619	moderate drought stress	0.273

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.035
DRR006520	Root Summer glycyrrhizin high producing strain	0.059
DRR006521	Root Winter glycyrrhizin high producing strain	0.282
DRR006522	Root Winter glycyrrhizin high producing strain	0.556
DRR006523	Root Summer glycyrrhizin low producing strain	0.030
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.050
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.100

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.073
SRR2868004	Drought Stress(Tissue:root)	0.027
SRR2967015	Control (Tissue:root)	0.114

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.122
SRR9715740	Leave	0.013
SRR9715741	Leave	0.037
SRR9715739	Root	0.073
SRR9715742	Root	0.043
SRR9715743	Root	0.110

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.277
SRR8749028	MeJA induced 9h	0.379
SRR8749029	MeJA induced 9h	0.350
SRR8749030	Uninduced	0.459
SRR8749031	Uninduced	0.625
SRR8749032	Uninduced	0.943

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.049
SRR8400027	Control-Root	0.114