Gene detail

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Gene detail information of Glyur000475s00029918.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22000.2	5.00E-93	RING-H2 group F2A
NR	XP_003519101.1	5.56E-167	PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Glycine max]
Swissprot	tr\|Q9ZT42\|RHF2A_ARATH	3.00E-120	E3 ubiquitin-protein ligase RHF2A
trEMBL	tr\|I1JGE8\|I1JGE8_SOYBN	2.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G34840.4}

Sequence

Transcript Sequence

>Glyur000475s00029918.1
TAACAACATCATCATAAAAGTGACAACAGTATCCAATCTTATTTTGAGGCGGAGAAAGCCAGAAAGGTAAAATCTTTTTGTCATTAGCTGTGGGGGCTTGTTTGTTTTCCAACACGCACAACAATATTCGGTGAAGAAAACCCATCAAACACATCCAACAAAGGCTTGATCTCTTGATCACTGGGTGGGGTCCTCTCGTCTCTTGAAACCCCTTCTCCTTTCTGGAGCGTTACCAATTCTCAATGGAGGTTCCAGAGATGGAAGGCAAGACTGAGAGTCATGCGACATCTGTAGCGGCCTTTGTAGAAGGGGGGATTCAAGAAGCCTGTGATGATGCTTGCAGCATATGCCTCGAGGACTTTTGCGAAAGTGACCCTGCAAACGTCACTAATTGCAAGCATGAGTTCCACCTGCAATGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAAACTATTAGCTTGAAAGATGCCACCAGTCAAGAATTGCTTGAGGCAGTAGAGCAAGAGAGGACCGCCCGATCAAGAAATGCCGCGATTTTTCATCACCCCATCCTTGGTGGTTTTGAATTGCAGCAATTGCCTGTGGGTGTAAATGATGGTGATCTTGAACAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGAGGAGAACACACCACCGCGGTCATAGAACTAGGTCATCTGCTCATGGCCATGGCCATCCACACTTGTTAGTATTCTCAGCTGAGCCCAGTGCACCTGATTCAGCTGTTGAAGGGGGAAATGAACCAGCTACAAGTCCTGTAGGAAGTGAATCATCACCATCACAGCAGATCCCATATCGAAGGCCATCAGAATTGCAGTCATTTTCTGATTCTCTGCGGTCCAGATTAAATGCGGTGTCCATGAGATACAAAGAATCAATTTCAAAAGGCACGAGGGGATGGAAGGAGAGGCTCTTCTCTCGCAGTTCTTCTATGTCAGAAATTGGTTCACAAGTTAGGAGGGAGTTGAATGCCGGAATTGCTAGTGCATCCCGGTTGATGGAGCGCCTTGAAACCAGACAAAATAATCCGCCTACGGCTATGGCTACTTTGTCAGATCATTTGATGGATTGTCACATTGCAGAGACGAGCAACCAGAACAACGTAGAAGCTCGTGGAGACAACTCTTTGCATGCAAATAATACTCCTGCTACCTACCAAGATAGCGAAGGGCCATCAGAATTGCAGTCATTTTCTGATTCTCTGCGGTCCAGATTAAATGCGGTGTCCATGAGATACAAAGAATCAATTTCAAAAGGCACGAGGGGATGGAAGGAGAGGCTCTTCTCTCGCAGTTCTTCTATGTCAGAAATTGGTTCACAAGTTAGGAGGGAGTTGAATGCCGGAATTGCTAGTGCATCCCGGTTGATGGAGCGCCTTGAAACCAGACAAAATAATCNGCCTACGGCTATGGCTACTTTGTCAGATCATTTGATGGATTGTCACATTGCAGAGACGAGCAACCAGAACAACATACAGATCAAAGTGGCAATCGCCAACTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00475	139723	157262	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000475s00029918.1	PF13639.1	zf-RING_2	32	73	2.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.629
SRR1783600	control	24.540
SRR1783602	moderate drought stress	39.826
SRR1811619	moderate drought stress	39.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.747
DRR006520	Root Summer glycyrrhizin high producing strain	27.900
DRR006521	Root Winter glycyrrhizin high producing strain	24.191
DRR006522	Root Winter glycyrrhizin high producing strain	23.750
DRR006523	Root Summer glycyrrhizin low producing strain	30.835
DRR006524	Root Summer glycyrrhizin low producing strain	30.967
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.359
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.805

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	25.438
SRR2868004	Drought Stress(Tissue:root)	27.279
SRR2967015	Control (Tissue:root)	31.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	26.243
SRR9715740	Leave	29.617
SRR9715741	Leave	32.271
SRR9715739	Root	13.323
SRR9715742	Root	20.438
SRR9715743	Root	16.942

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.438
SRR8749028	MeJA induced 9h	22.469
SRR8749029	MeJA induced 9h	14.971
SRR8749030	Uninduced	24.380
SRR8749031	Uninduced	17.164
SRR8749032	Uninduced	19.957

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	50.010
SRR8400027	Control-Root	43.063