Gene detail information of Glyur000475s00029918.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22000.2 | 5.00E-93 | RING-H2 group F2A |
| NR | XP_003519101.1 | 5.56E-167 | PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Glycine max] |
| Swissprot | tr|Q9ZT42|RHF2A_ARATH | 3.00E-120 | E3 ubiquitin-protein ligase RHF2A |
| trEMBL | tr|I1JGE8|I1JGE8_SOYBN | 2.00E-167 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G34840.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00475 | 139723 | 157262 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000475s00029918.2 | PF13639.1 | zf-RING_2 | 32 | 73 | 1.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.629 |
| SRR1783600 | control | 24.540 |
| SRR1783602 | moderate drought stress | 39.826 |
| SRR1811619 | moderate drought stress | 39.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.747 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.900 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.191 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.750 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.835 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.967 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.359 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.438 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.279 |
| SRR2967015 | Control (Tissue:root) | 31.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.243 |
| SRR9715740 | Leave | 29.617 |
| SRR9715741 | Leave | 32.271 |
| SRR9715739 | Root | 13.323 |
| SRR9715742 | Root | 20.438 |
| SRR9715743 | Root | 16.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.438 |
| SRR8749028 | MeJA induced 9h | 22.469 |
| SRR8749029 | MeJA induced 9h | 14.971 |
| SRR8749030 | Uninduced | 24.380 |
| SRR8749031 | Uninduced | 17.164 |
| SRR8749032 | Uninduced | 19.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 50.010 |
| SRR8400027 | Control-Root | 43.063 |