Gene detail information of Glyur000476s00022364.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G66160.14.00E-81CYS, MET, PRO, and GLY protein 1
NRXP_007163365.10hypothetical protein PHAVU_001G228500g [Phaseolus vulgaris]
COGYP_001957952.12.00E-11hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q5PNY6|PUB21_ARATH2.00E-116U-box domain-containing protein 21
trEMBLtr|V7CZ18|V7CZ18_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW35359.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0047618833211-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000476s00022364.1PF04564.10U-box331041.90E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.192
SRR1783600control0.179
SRR1783602moderate drought stress0.363
SRR1811619moderate drought stress0.366

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain150.623
DRR006520Root Summer glycyrrhizin high producing strain148.922
DRR006521Root Winter glycyrrhizin high producing strain1.685
DRR006522Root Winter glycyrrhizin high producing strain1.471
DRR006523Root Summer glycyrrhizin low producing strain110.102
DRR006524Root Summer glycyrrhizin low producing strain110.684
DRR006525Leaf Summer glycyrrhizin high producing strain19.536
DRR006526Leaf Summer glycyrrhizin high producing strain19.377

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.724
SRR2868004Drought Stress(Tissue:root)83.555
SRR2967015Control (Tissue:root)635.838

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave468.330
SRR9715740Leave252.794
SRR9715741Leave556.018
SRR9715739Root940.677
SRR9715742Root1105.080
SRR9715743Root1062.002

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h312.656
SRR8749028MeJA induced 9h324.766
SRR8749029MeJA induced 9h241.991
SRR8749030Uninduced399.883
SRR8749031Uninduced220.551
SRR8749032Uninduced183.573

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.582
SRR8400027Control-Root59.557

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved