Gene detail information of Glyur000476s00022368.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66140.1 | 1.00E-37 | zinc finger protein 4 |
| NR | XP_003519323.1 | 2.14E-97 | PREDICTED: zinc finger protein 4-like isoformX2 [Glycine max] |
| Swissprot | tr|Q39263|ZFP4_ARATH | 6.00E-45 | Zinc finger protein 4 |
| trEMBL | tr|I1JHU2|I1JHU2_SOYBN | 8.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40960.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00476 | 22163 | 22945 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.707 |
| SRR1783600 | control | 33.049 |
| SRR1783602 | moderate drought stress | 24.077 |
| SRR1811619 | moderate drought stress | 23.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.152 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.145 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.605 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.417 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.139 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.900 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.171 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 38.286 |
| SRR2868004 | Drought Stress(Tissue:root) | 74.324 |
| SRR2967015 | Control (Tissue:root) | 53.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.568 |
| SRR9715740 | Leave | 2.852 |
| SRR9715741 | Leave | 2.188 |
| SRR9715739 | Root | 4.411 |
| SRR9715742 | Root | 6.342 |
| SRR9715743 | Root | 5.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.442 |
| SRR8749028 | MeJA induced 9h | 0.493 |
| SRR8749029 | MeJA induced 9h | 0.167 |
| SRR8749030 | Uninduced | 0.470 |
| SRR8749031 | Uninduced | 0.340 |
| SRR8749032 | Uninduced | 0.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.141 |
| SRR8400027 | Control-Root | 21.633 |