Gene detail information of Glyur000476s00022378.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16560.1 | 4.00E-44 | Homeodomain-like superfamily protein |
| NR | AES70915.2 | 6.14E-123 | transcription factor KAN2 [Medicago truncatula] |
| Swissprot | tr|Q93WJ9|KAN1_ARATH | 3.00E-56 | Transcription repressor KAN1 |
| trEMBL | tr|G7J8N8|G7J8N8_MEDTR | 2.00E-123 | Transcription factor KAN2 {ECO:0000313|EMBL:AES70915.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00476 | 58212 | 77579 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | G2-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000476s00022378.1 | PF00249.26 | Myb_DNA-binding | 291 | 340 | 5.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.388 |
| SRR1783600 | control | 7.656 |
| SRR1783602 | moderate drought stress | 9.553 |
| SRR1811619 | moderate drought stress | 9.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.074 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.101 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.700 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.328 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.757 |
| SRR2967015 | Control (Tissue:root) | 2.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.248 |
| SRR9715740 | Leave | 0.621 |
| SRR9715741 | Leave | 1.363 |
| SRR9715739 | Root | 2.450 |
| SRR9715742 | Root | 5.068 |
| SRR9715743 | Root | 3.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.059 |
| SRR8749028 | MeJA induced 9h | 0.103 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.030 |
| SRR8749031 | Uninduced | 0.003 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.907 |
| SRR8400027 | Control-Root | 4.929 |