Gene detail information of Glyur000476s00022381.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G51270.13.00E-155protein serine/threonine kinases;ATP binding;catalytics
NRXP_004503102.10PREDICTED: serine/threonine-protein kinase rio2-like [Cicer arietinum]
COGYP_008432369.13.00E-55hypothetical protein N186_05055 [Thermofilum sp. 1910b]
trEMBLtr|I1MZH4|I1MZH4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G04910.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00476119055125771-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07179RIOK2 EC:2.7.11.1 Ribosome biogenesis in eukaryotes map03008


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0003824  catalytic activity

GO:0004672  protein kinase activity

GO:0004674  protein serine/threonine kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000476s00022381.1PF09202.6Rio2_N8894.10E-34
Glyur000476s00022381.1PF01163.17RIO11062784.50E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.930
SRR1783600control21.049
SRR1783602moderate drought stress22.402
SRR1811619moderate drought stress22.121

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.289
DRR006520Root Summer glycyrrhizin high producing strain28.947
DRR006521Root Winter glycyrrhizin high producing strain37.523
DRR006522Root Winter glycyrrhizin high producing strain36.306
DRR006523Root Summer glycyrrhizin low producing strain23.300
DRR006524Root Summer glycyrrhizin low producing strain23.494
DRR006525Leaf Summer glycyrrhizin high producing strain9.941
DRR006526Leaf Summer glycyrrhizin high producing strain9.838

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.331
SRR2868004Drought Stress(Tissue:root)26.438
SRR2967015Control (Tissue:root)25.001

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.419
SRR9715740Leave19.582
SRR9715741Leave19.267
SRR9715739Root1.794
SRR9715742Root13.053
SRR9715743Root9.672

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.094
SRR8749028MeJA induced 9h22.266
SRR8749029MeJA induced 9h20.659
SRR8749030Uninduced18.898
SRR8749031Uninduced14.578
SRR8749032Uninduced13.971

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.346
SRR8400027Control-Root22.905

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved