Gene detail information of Glyur000476s00022389.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G17330.10glutamate decarboxylase
NRKHN24164.10Glutamate decarboxylase 1 [Glycine soja]
COGYP_007243829.15.00E-149glutamate decarboxylase [Thioflavicoccus mobilis 8321]
Swissprottr|Q42521|DCE1_ARATH0Glutamate decarboxylase 1
trEMBLtr|A8C8H3|A8C8H3_SOYBN0Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00476145131151344-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01580E4.1.1.15, gadB, gadA, GAD EC:4.1.1.15 Butanoate metabolism map00650
Alanine, aspartate and glutamate metabolismmap00250
beta-Alanine metabolismmap00410
Taurine and hypotaurine metabolismmap00430
Quorum sensingmap02024
GABAergic synapsemap04727
Type I diabetes mellitusmap04940


Gene Ontology

biological_process

GO:0006536  glutamate metabolic process

GO:0019752  carboxylic acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004351  glutamate decarboxylase activity

GO:0016831  carboxy-lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000476s00022389.1PF00282.14Pyridoxal_deC331233.50E-18
Glyur000476s00022389.1PF00282.14Pyridoxal_deC1243402.10E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control91.664
SRR1783600control91.856
SRR1783602moderate drought stress72.382
SRR1811619moderate drought stress71.550

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain104.681
DRR006520Root Summer glycyrrhizin high producing strain103.116
DRR006521Root Winter glycyrrhizin high producing strain11.359
DRR006522Root Winter glycyrrhizin high producing strain11.286
DRR006523Root Summer glycyrrhizin low producing strain75.470
DRR006524Root Summer glycyrrhizin low producing strain75.326
DRR006525Leaf Summer glycyrrhizin high producing strain158.686
DRR006526Leaf Summer glycyrrhizin high producing strain159.746

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)359.953
SRR2868004Drought Stress(Tissue:root)320.674
SRR2967015Control (Tissue:root)349.702

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave270.500
SRR9715740Leave239.616
SRR9715741Leave327.908
SRR9715739Root190.909
SRR9715742Root90.795
SRR9715743Root116.361

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h45.845
SRR8749028MeJA induced 9h68.126
SRR8749029MeJA induced 9h41.246
SRR8749030Uninduced41.121
SRR8749031Uninduced15.105
SRR8749032Uninduced10.486

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root273.351
SRR8400027Control-Root239.660

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved