Gene detail information of Glyur000477s00024395.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G25230.11.00E-139rotamase FKBP 1
NRAES59301.20FKBP-type peptidyl-prolyl cis-trans isomerase [Medicago truncatula]
COGYP_003548306.13.00E-15FKBP-type peptidylprolyl isomerase [Coraliomargarita akajimensis DSM 45221]
Swissprottr|Q38931|FKB62_ARATH1.00E-175Peptidyl-prolyl cis-trans isomerase FKBP62
trEMBLtr|G7IBB7|G7IBB7_MEDTR0FKBP-type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:AES59301.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004772450229593-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09571FKBP4_5 EC:5.2.1.8 Estrogen signaling pathway map04915


Gene Ontology

biological_process

GO:0006457  protein folding


molecular_function

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000477s00024395.1PF00254.23FKBP_C571393.80E-14
Glyur000477s00024395.1PF00254.23FKBP_C1652574.40E-13
Glyur000477s00024395.1PF00254.23FKBP_C2853772.20E-20
Glyur000477s00024395.1PF00515.23TPR_15075400.00059


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.230
SRR1783600control12.482
SRR1783602moderate drought stress12.858
SRR1811619moderate drought stress12.793

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.245
DRR006520Root Summer glycyrrhizin high producing strain12.236
DRR006521Root Winter glycyrrhizin high producing strain18.438
DRR006522Root Winter glycyrrhizin high producing strain18.068
DRR006523Root Summer glycyrrhizin low producing strain9.994
DRR006524Root Summer glycyrrhizin low producing strain9.823
DRR006525Leaf Summer glycyrrhizin high producing strain8.162
DRR006526Leaf Summer glycyrrhizin high producing strain8.146

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.381
SRR2868004Drought Stress(Tissue:root)13.132
SRR2967015Control (Tissue:root)14.801

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.725
SRR9715740Leave13.971
SRR9715741Leave11.457
SRR9715739Root0.521
SRR9715742Root4.016
SRR9715743Root3.404

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.254
SRR8749028MeJA induced 9h7.012
SRR8749029MeJA induced 9h14.500
SRR8749030Uninduced11.071
SRR8749031Uninduced11.932
SRR8749032Uninduced24.597

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.184
SRR8400027Control-Root24.096

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved