Gene detail information of Glyur000477s00024400.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49810.1 | 1.00E-141 | ARM repeat superfamily protein |
| NR | XP_003589041.1 | 0 | U-box domain-containing protein [Medicago truncatula] |
| COG | YP_001957949.1 | 2.00E-08 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q058P4|PUB30_ARATH | 0 | U-box domain-containing protein 30 |
| trEMBL | tr|G7IBA8|G7IBA8_MEDTR | 0 | E3 ubiquitin ligase PUB14 {ECO:0000313|EMBL:AES59292.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00477 | 69569 | 70891 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000477s00024400.1 | PF04564.10 | U-box | 50 | 120 | 2.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.443 |
| SRR1783600 | control | 2.398 |
| SRR1783602 | moderate drought stress | 2.482 |
| SRR1811619 | moderate drought stress | 2.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.258 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.409 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.441 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.921 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.427 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.479 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.950 |
| SRR2967015 | Control (Tissue:root) | 15.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.186 |
| SRR9715740 | Leave | 1.267 |
| SRR9715741 | Leave | 1.802 |
| SRR9715739 | Root | 7.389 |
| SRR9715742 | Root | 8.397 |
| SRR9715743 | Root | 6.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.347 |
| SRR8749028 | MeJA induced 9h | 1.504 |
| SRR8749029 | MeJA induced 9h | 1.866 |
| SRR8749030 | Uninduced | 0.330 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.282 |
| SRR8400027 | Control-Root | 13.100 |