Gene detail information of Glyur000479s00019690.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16780.1 | 3.00E-113 | Transducin family protein / WD-40 repeat family protein |
| NR | NP_001241978.1 | 0 | uncharacterized protein LOC100791834 [Glycine max] |
| COG | YP_007143594.1 | 5.00E-15 | peptidase C14 caspase catalytic subunit p20 [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|O22469|MSI3_ARATH | 3.00E-150 | WD-40 repeat-containing protein MSI3 |
| trEMBL | tr|C6TA07|C6TA07_SOYBN | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU18659.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00479 | 14742 | 17700 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000479s00019690.1 | PF12265.3 | CAF1C_H4-bd | 15 | 49 | 1.20E-09 |
| Glyur000479s00019690.1 | PF00400.27 | WD40 | 98 | 131 | 2.10E-06 |
| Glyur000479s00019690.1 | PF00400.27 | WD40 | 144 | 180 | 1.30E-06 |
| Glyur000479s00019690.1 | PF00400.27 | WD40 | 187 | 221 | 0.003 |
| Glyur000479s00019690.1 | PF00400.27 | WD40 | 230 | 267 | 1.10E-06 |
| Glyur000479s00019690.1 | PF00400.27 | WD40 | 287 | 323 | 0.00032 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.346 |
| SRR1783600 | control | 11.396 |
| SRR1783602 | moderate drought stress | 8.435 |
| SRR1811619 | moderate drought stress | 8.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.629 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.520 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.660 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.637 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.907 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.885 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.684 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 33.250 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.138 |
| SRR2967015 | Control (Tissue:root) | 20.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.977 |
| SRR9715740 | Leave | 7.483 |
| SRR9715741 | Leave | 7.047 |
| SRR9715739 | Root | 15.765 |
| SRR9715742 | Root | 12.756 |
| SRR9715743 | Root | 11.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.193 |
| SRR8749028 | MeJA induced 9h | 22.877 |
| SRR8749029 | MeJA induced 9h | 36.506 |
| SRR8749030 | Uninduced | 3.323 |
| SRR8749031 | Uninduced | 2.639 |
| SRR8749032 | Uninduced | 3.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.883 |
| SRR8400027 | Control-Root | 18.934 |