Gene detail information of Glyur000479s00019695.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16730.1 | 0 | glycosyl hydrolase family 35 protein |
| NR | XP_004505828.1 | 0 | PREDICTED: beta-galactosidase 13-like [Cicer arietinum] |
| COG | YP_008089223.1 | 4.00E-42 | Beta-galactosidase [Chthonomonas calidirosea T49] |
| Swissprot | tr|Q9SCU8|BGA14_ARATH | 0 | Beta-galactosidase 14 (Precursor) |
| trEMBL | tr|G7JNE5|G7JNE5_MEDTR | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00479 | 46834 | 53420 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000479s00019695.1 | PF01301.14 | Glyco_hydro_35 | 57 | 255 | 7.00E-78 |
| Glyur000479s00019695.1 | PF01301.14 | Glyco_hydro_35 | 268 | 334 | 3.60E-18 |
| Glyur000479s00019695.1 | PF02140.13 | Gal_Lectin | 713 | 790 | 1.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.058 |
| SRR1783600 | control | 0.071 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.139 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.131 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.719 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.075 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.020 |
| SRR2967015 | Control (Tissue:root) | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.305 |
| SRR9715740 | Leave | 0.050 |
| SRR9715741 | Leave | 0.101 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.028 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.018 |
| SRR8749031 | Uninduced | 0.036 |
| SRR8749032 | Uninduced | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.015 |
| SRR8400027 | Control-Root | 0.016 |