Gene detail information of Glyur000479s00019699.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G38600.10HEAT repeat ;HECT-domain (ubiquitin-transferase)
NRXP_003540876.10PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max]
Swissprottr|Q6WWW4|UPL3_ARATH0E3 ubiquitin-protein ligase UPL3
trEMBLtr|I1LPS2|I1LPS2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G03640.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004795983670005-


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10590TRIP12 EC:2.3.2.26 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000479s00019699.1PF00632.20HECT152518981.40E-86


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.355
SRR1783600control26.561
SRR1783602moderate drought stress27.528
SRR1811619moderate drought stress26.954

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.752
DRR006520Root Summer glycyrrhizin high producing strain23.938
DRR006521Root Winter glycyrrhizin high producing strain31.665
DRR006522Root Winter glycyrrhizin high producing strain31.103
DRR006523Root Summer glycyrrhizin low producing strain26.582
DRR006524Root Summer glycyrrhizin low producing strain27.142
DRR006525Leaf Summer glycyrrhizin high producing strain17.913
DRR006526Leaf Summer glycyrrhizin high producing strain17.813

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)56.914
SRR2868004Drought Stress(Tissue:root)63.490
SRR2967015Control (Tissue:root)66.757

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.113
SRR9715740Leave29.674
SRR9715741Leave40.677
SRR9715739Root17.145
SRR9715742Root67.380
SRR9715743Root56.502

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.003
SRR8749028MeJA induced 9h45.579
SRR8749029MeJA induced 9h28.101
SRR8749030Uninduced20.746
SRR8749031Uninduced33.198
SRR8749032Uninduced24.084

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.554
SRR8400027Control-Root50.548

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved