Gene detail information of Glyur000480s00023799.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G14720.14.00E-131xyloglucan endotransglucosylase/hydrolase 28
NRXP_003638758.10Xyloglucan endotransglycosylase/hydrolase [Medicago truncatula]
COGYP_003060495.11.00E-13glycoside hydrolase family protein [Hirschia baltica ATCC 49814]
Swissprottr|Q38909|XTH28_ARATH2.00E-171Probable xyloglucan endotransglucosylase/hydrolase protein 28 (Precursor)
trEMBLtr|G8A358|G8A358_MEDTR0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0048097582100889+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000480s00023799.1PF00722.16Glyco_hydro_16322151.00E-56
Glyur000480s00023799.1PF06955.7XET_C2502891.10E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control71.704
SRR1783600control72.074
SRR1783602moderate drought stress53.941
SRR1811619moderate drought stress53.552

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain115.278
DRR006520Root Summer glycyrrhizin high producing strain114.523
DRR006521Root Winter glycyrrhizin high producing strain52.114
DRR006522Root Winter glycyrrhizin high producing strain50.516
DRR006523Root Summer glycyrrhizin low producing strain201.141
DRR006524Root Summer glycyrrhizin low producing strain200.035
DRR006525Leaf Summer glycyrrhizin high producing strain48.808
DRR006526Leaf Summer glycyrrhizin high producing strain48.880

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)122.362
SRR2868004Drought Stress(Tissue:root)119.216
SRR2967015Control (Tissue:root)122.736

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave81.667
SRR9715740Leave106.246
SRR9715741Leave103.715
SRR9715739Root77.708
SRR9715742Root82.536
SRR9715743Root76.931

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h304.838
SRR8749028MeJA induced 9h146.196
SRR8749029MeJA induced 9h269.695
SRR8749030Uninduced248.322
SRR8749031Uninduced118.537
SRR8749032Uninduced106.598

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root123.511
SRR8400027Control-Root153.547

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved