Gene detail information of Glyur000480s00023804.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38460.1 | 1.00E-108 | geranylgeranyl reductase |
| NR | XP_004504588.1 | 0 | PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like isoform X1 [Cicer arietinum] |
| COG | YP_007122344.1 | 2.00E-78 | geranylgeranyl pyrophosphate synthase [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q39108|GGR_ARATH | 1.00E-136 | Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic (Precursor) |
| trEMBL | tr|I3S8C8|I3S8C8_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK36520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00480 | 151977 | 155389 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13789 | GGPS | EC:2.5.1.1 2.5.1.10 2.5.1.29 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000480s00023804.1 | PF00348.12 | polyprenyl_synt | 78 | 309 | 1.60E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.397 |
| SRR1783600 | control | 17.877 |
| SRR1783602 | moderate drought stress | 27.548 |
| SRR1811619 | moderate drought stress | 27.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.378 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.952 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.119 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.694 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.554 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.322 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 97.589 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 97.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.932 |
| SRR2868004 | Drought Stress(Tissue:root) | 61.868 |
| SRR2967015 | Control (Tissue:root) | 66.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 83.248 |
| SRR9715740 | Leave | 113.296 |
| SRR9715741 | Leave | 66.072 |
| SRR9715739 | Root | 18.272 |
| SRR9715742 | Root | 31.175 |
| SRR9715743 | Root | 27.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.796 |
| SRR8749028 | MeJA induced 9h | 57.556 |
| SRR8749029 | MeJA induced 9h | 54.785 |
| SRR8749030 | Uninduced | 31.162 |
| SRR8749031 | Uninduced | 43.288 |
| SRR8749032 | Uninduced | 38.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.367 |
| SRR8400027 | Control-Root | 23.689 |