Gene detail information of Glyur000481s00027086.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G48900.10Signal recognition particle, SRP54 subunit protein
NRKDP37062.10hypothetical protein JCGZ_06118 [Jatropha curcas]
COGYP_183899.16.00E-117signal recognition particle protein Srp54 [Thermococcus kodakarensis KOD1]
Swissprottr|P49972|SR542_SOLLC0Signal recognition particle 54 kDa protein 2
trEMBLtr|A0A067KLN9|A0A067KLN9_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP37062.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00481134246139686+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03106SRP54, ffh EC:3.6.5.4 Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0006614  SRP-dependent cotranslational protein targeting to membrane


cellular_component

GO:0048500  signal recognition particle


molecular_function

GO:0003924  GTPase activity

GO:0005525  GTP binding

GO:0008312  7S RNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000481s00027086.1PF02881.14SRP54_N6833.40E-13
Glyur000481s00027086.1PF00448.17SRP541022963.80E-78
Glyur000481s00027086.1PF02978.14SRP_SPB3274163.10E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.831
SRR1783600control20.095
SRR1783602moderate drought stress20.692
SRR1811619moderate drought stress20.553

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.278
DRR006520Root Summer glycyrrhizin high producing strain35.760
DRR006521Root Winter glycyrrhizin high producing strain46.304
DRR006522Root Winter glycyrrhizin high producing strain45.357
DRR006523Root Summer glycyrrhizin low producing strain29.126
DRR006524Root Summer glycyrrhizin low producing strain28.894
DRR006525Leaf Summer glycyrrhizin high producing strain20.366
DRR006526Leaf Summer glycyrrhizin high producing strain20.483

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)63.256
SRR2868004Drought Stress(Tissue:root)57.402
SRR2967015Control (Tissue:root)57.985

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.921
SRR9715740Leave36.329
SRR9715741Leave46.654
SRR9715739Root4.978
SRR9715742Root26.569
SRR9715743Root23.711

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.481
SRR8749028MeJA induced 9h55.683
SRR8749029MeJA induced 9h45.325
SRR8749030Uninduced39.153
SRR8749031Uninduced54.810
SRR8749032Uninduced39.360

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root53.359
SRR8400027Control-Root49.620

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved