Gene detail information of Glyur000482s00021720.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23820.1 | 5.00E-57 | spermidine synthase 1 |
| NR | KHN48603.1 | 4.76E-97 | Spermidine synthase [Glycine soja] |
| COG | YP_003291619.1 | 6.00E-35 | spermidine synthase [Rhodothermus marinus DSM 4252] |
| Swissprot | tr|Q96557|SPD2_DATST | 1.00E-83 | Spermidine synthase 2 |
| trEMBL | tr|I1MTI8|I1MTI8_SOYBN | 2.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G09870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00482 | 7371 | 9571 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00797 | speE, SRM | EC:2.5.1.16 | Cysteine and methionine metabolism | map00270 |
| Arginine and proline metabolism | map00330 | |||
| beta-Alanine metabolism | map00410 | |||
| Glutathione metabolism | map00480 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000482s00021720.1 | PF01564.12 | Spermine_synth | 1 | 131 | 1.60E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.107 |
| SRR1783600 | control | 0.063 |
| SRR1783602 | moderate drought stress | 0.002 |
| SRR1811619 | moderate drought stress | 0.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.339 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.367 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.385 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.366 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.119 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.190 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.151 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 59.904 |
| SRR9715740 | Leave | 8.097 |
| SRR9715741 | Leave | 22.301 |
| SRR9715739 | Root | 0.077 |
| SRR9715742 | Root | 0.176 |
| SRR9715743 | Root | 0.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.050 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.604 |
| SRR8400027 | Control-Root | 0.812 |