Gene detail information of Glyur000482s00021726.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G60190.17.00E-127ARM repeat superfamily protein
NRXP_004501944.10PREDICTED: U-box domain-containing protein 18-like [Cicer arietinum]
COGYP_001958455.11.00E-12hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|O80742|PUB19_ARATH5.00E-157U-box domain-containing protein 19
trEMBLtr|A0A072UZQ5|A0A072UZQ5_MEDTR0Spotted leaf protein, putative {ECO:0000313|EMBL:KEH35047.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004823733639357+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000482s00021726.1PF04564.10U-box2783459.90E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.600
SRR1783600control0.657
SRR1783602moderate drought stress1.853
SRR1811619moderate drought stress1.826

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.165
DRR006520Root Summer glycyrrhizin high producing strain9.918
DRR006521Root Winter glycyrrhizin high producing strain7.441
DRR006522Root Winter glycyrrhizin high producing strain7.213
DRR006523Root Summer glycyrrhizin low producing strain40.298
DRR006524Root Summer glycyrrhizin low producing strain39.400
DRR006525Leaf Summer glycyrrhizin high producing strain2.231
DRR006526Leaf Summer glycyrrhizin high producing strain2.151

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.205
SRR2868004Drought Stress(Tissue:root)4.910
SRR2967015Control (Tissue:root)8.439

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.486
SRR9715740Leave14.853
SRR9715741Leave37.567
SRR9715739Root28.542
SRR9715742Root24.439
SRR9715743Root25.488

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.993
SRR8749028MeJA induced 9h10.365
SRR8749029MeJA induced 9h2.955
SRR8749030Uninduced6.460
SRR8749031Uninduced2.030
SRR8749032Uninduced2.185

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.695
SRR8400027Control-Root2.042

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved