Gene detail information of Glyur000482s00021737.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47990.1 | 2.00E-138 | SUGAR-INSENSITIVE 3 |
| NR | KHN34307.1 | 0 | E3 ubiquitin-protein ligase SIS3 [Glycine soja] |
| Swissprot | tr|Q8GYT9|SIS3_ARATH | 5.00E-174 | E3 ubiquitin-protein ligase SIS3 (Precursor) |
| trEMBL | tr|K7KMP9|K7KMP9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G02130.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00482 | 93103 | 98643 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000482s00021737.2 | PF13639.1 | zf-RING_2 | 258 | 300 | 4.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.325 |
| SRR1783600 | control | 2.315 |
| SRR1783602 | moderate drought stress | 2.686 |
| SRR1811619 | moderate drought stress | 2.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.990 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.012 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.192 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.084 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.643 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.621 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.638 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.643 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.214 |
| SRR2967015 | Control (Tissue:root) | 6.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.665 |
| SRR9715740 | Leave | 10.030 |
| SRR9715741 | Leave | 6.551 |
| SRR9715739 | Root | 1.465 |
| SRR9715742 | Root | 1.714 |
| SRR9715743 | Root | 1.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.357 |
| SRR8749028 | MeJA induced 9h | 2.662 |
| SRR8749029 | MeJA induced 9h | 0.812 |
| SRR8749030 | Uninduced | 1.071 |
| SRR8749031 | Uninduced | 0.036 |
| SRR8749032 | Uninduced | 0.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.576 |
| SRR8400027 | Control-Root | 5.826 |