Gene detail information of Glyur000482s00021741.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62400.1 | 1.00E-94 | Protein kinase superfamily protein |
| NR | XP_004501934.1 | 0 | PREDICTED: serine/threonine-protein kinase HT1-like [Cicer arietinum] |
| COG | YP_001958461.1 | 4.00E-32 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q2MHE4|HT1_ARATH | 4.00E-116 | Serine/threonine-protein kinase HT1 |
| trEMBL | tr|G7J5H6|G7J5H6_MEDTR | 0 | Serine/Threonine-kinase HT1-like protein {ECO:0000313|EMBL:AES71532.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00482 | 122281 | 124720 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:2.1.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000482s00021741.1 | PF00069.20 | Pkinase | 61 | 265 | 2.90E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.139 |
| SRR1783600 | control | 12.986 |
| SRR1783602 | moderate drought stress | 9.636 |
| SRR1811619 | moderate drought stress | 9.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.957 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.353 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.803 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.677 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.031 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.175 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.616 |
| SRR2967015 | Control (Tissue:root) | 9.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.260 |
| SRR9715740 | Leave | 3.808 |
| SRR9715741 | Leave | 2.895 |
| SRR9715739 | Root | 12.059 |
| SRR9715742 | Root | 17.501 |
| SRR9715743 | Root | 15.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.104 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.167 |
| SRR8400027 | Control-Root | 32.542 |