Gene detail

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Gene detail information of Glyur000482s00021743.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01500.1	7.00E-56	carbonic anhydrase 1
NR	ACF78735.1	3.97E-112	unknown [Zea mays]
COG	NP_969096.1	2.00E-39	hypothetical protein Bd2259 [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|P27141\|CAHC_TOBAC	3.00E-67	Carbonic anhydrase, chloroplastic (Precursor)
trEMBL	tr\|B4F9E2\|B4F9E2_MAIZE	1.00E-112	Carbonic anhydrase {ECO:0000256\|RuleBase:RU003956}

Sequence

Transcript Sequence

>Glyur000482s00021743.1
AAGAACCCGGATCTCTACAATAAACTTGCTAATGGCCAATGGCCCAAGTTTCTGGTATTTGCTTGCTCTGACTCTCGAGTGAGTCCCTCTGTTATCCTGAACTTCCAACCTGGAGAAGCTTTCATGGTCCGCAACATTGCTAACATGGTCCCTCCCTTTAATCAGGTGCAGAACATCCTGGTCATTGGACATAGCCGCTGCGGAGGAATAGNAAGGCTTATGAGTCATCCTGAGGATGGCTCTGCTCCATTCGACTTCATTGACGATTGGGTGAAAATTGGTTTACCTGCCAAAGTGAAGGTCCTGAAAGAATATGAAGACTATGATTTCAAAGAACAATGCAAATTCTGTGAAGTGGAGTCAGTGAATAACTCATTAGTGAACCTGCAGACATACCCATATGTTGATAGAGAAATAAGGAACAAGAGCATGGCGNTGTTTGGGGGTTACTATGATTTTGTGAAGGGAGAATTCAAGCTTTGGAACAAGAACCCGGATCTCTACAATAAACTTGCTAATGGCCAATGGCCCAAGTTTCTGGTATTTGCTTGCTCTGACTCTCGAGTGAGTCCCTCTGTTATCCTGAACTTCCAACCTGGAGAAGCTTTCATAGTCCGAAACATTGCTAACATGGTCCCAGCATTTAATCAGTTAAGGTACAGTGGAGTTGGTGCAACCATTGATCATGCTATTTCGAATCTTAAGAACATCCTGGTCATTGGACATAGTTGCTGCGGCGGAATAGCAAGGTTTATGAGACATCCTGAGGATGGCTCTGCTCCATTGAAAGACTTAATTTCTACACAACTATATGATTGGTTGAAAATTGGTTTACCTGCCAAAGTCAAGGTCCTGAAAGAATATGAAGGCTATGATGTCAAGGAACAATGCAAATTCTGTGAAATGGAGTCAGTGAATAACTCGTTAGTGAACCTGCTGACATATCCACTTGTTGATAGAGAAATAAGGAACAAGAGCTTGGCGCTGTTTGGGGCTTACTATGATTTTGTGAAGGGAGAATTCAAGCTCTGGAAGTATAAGCCTCACATCACTGAACCCATTACCATCCCTCAGTAGAGGACTCAAGCTCAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00482	135247	143990	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01673	cynT, can	EC:4.2.1.1	Nitrogen metabolism	map00910

Gene Ontology

biological_process
GO:0015976 carbon utilization

molecular_function GO:0004089 carbonate dehydratase activity GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000482s00021743.1	PF00484.14	Pro_CA	18	157	3.00E-26
Glyur000482s00021743.1	PF00484.14	Pro_CA	180	340	1.70E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.305
SRR1783600	control	27.138
SRR1783602	moderate drought stress	19.520
SRR1811619	moderate drought stress	19.008

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.275
DRR006520	Root Summer glycyrrhizin high producing strain	0.477
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.106
DRR006523	Root Summer glycyrrhizin low producing strain	1.703
DRR006524	Root Summer glycyrrhizin low producing strain	1.973
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.913
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.007

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	26.396
SRR2868004	Drought Stress(Tissue:root)	14.757
SRR2967015	Control (Tissue:root)	22.482

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	38.056
SRR9715740	Leave	122.234
SRR9715741	Leave	38.455
SRR9715739	Root	19.345
SRR9715742	Root	47.555
SRR9715743	Root	45.171

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	42.122
SRR8400027	Control-Root	88.539