Gene detail information of Glyur000483s00030628.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11580.1 | 2.00E-38 | methylesterase PCR A |
| NR | KHN30453.1 | 2.49E-66 | Pectinesterase 2.2 [Glycine soja] |
| COG | YP_007225330.1 | 1.00E-12 | pectin methylesterase [Echinicola vietnamensis DSM 17526] |
| Swissprot | tr|Q96576|PME3_SOLLC | 5.00E-46 | Pectinesterase 3 (Precursor) |
| trEMBL | tr|I1JAV9|I1JAV9_SOYBN | 5.00E-66 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00483 | 40757 | 45879 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000483s00030628.2 | PF04043.10 | PMEI | 57 | 208 | 4.90E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.301 |
| SRR1783600 | control | 33.488 |
| SRR1783602 | moderate drought stress | 26.546 |
| SRR1811619 | moderate drought stress | 25.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.043 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.586 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.484 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.369 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.286 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.070 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.266 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.371 |
| SRR2967015 | Control (Tissue:root) | 37.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.123 |
| SRR9715740 | Leave | 0.038 |
| SRR9715741 | Leave | 0.019 |
| SRR9715739 | Root | 33.857 |
| SRR9715742 | Root | 8.890 |
| SRR9715743 | Root | 13.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 541.173 |
| SRR8749028 | MeJA induced 9h | 1467.438 |
| SRR8749029 | MeJA induced 9h | 972.042 |
| SRR8749030 | Uninduced | 1705.189 |
| SRR8749031 | Uninduced | 1713.846 |
| SRR8749032 | Uninduced | 1807.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.116 |
| SRR8400027 | Control-Root | 17.545 |