Gene detail information of Glyur000483s00030629.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11580.16.00E-99methylesterase PCR A
NRKHN30453.11.45E-155Pectinesterase 2.2 [Glycine soja]
COGYP_007225325.13.00E-36pectin methylesterase [Echinicola vietnamensis DSM 17526]
Swissprottr|P09607|PME21_SOLLC2.00E-121Pectinesterase 2.1 (Precursor)
trEMBLtr|Q8RVX1|Q8RVX1_SESRO1.00E-155Pectinesterase {ECO:0000256|RuleBase:RU000589} (Precursor)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004834818350729-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000483s00030629.1PF04043.10PMEI602111.00E-19
Glyur000483s00030629.1PF01095.14Pectinesterase2454634.70E-106


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control101.192
SRR1783600control100.790
SRR1783602moderate drought stress31.789
SRR1811619moderate drought stress31.950

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain42.761
DRR006520Root Summer glycyrrhizin high producing strain41.902
DRR006521Root Winter glycyrrhizin high producing strain3.067
DRR006522Root Winter glycyrrhizin high producing strain2.622
DRR006523Root Summer glycyrrhizin low producing strain32.523
DRR006524Root Summer glycyrrhizin low producing strain31.240
DRR006525Leaf Summer glycyrrhizin high producing strain0.055
DRR006526Leaf Summer glycyrrhizin high producing strain0.053

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)162.463
SRR2868004Drought Stress(Tissue:root)145.349
SRR2967015Control (Tissue:root)189.144

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.660
SRR9715740Leave0.000
SRR9715741Leave0.329
SRR9715739Root46.892
SRR9715742Root29.931
SRR9715743Root32.535

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h158.731
SRR8749028MeJA induced 9h19.168
SRR8749029MeJA induced 9h55.221
SRR8749030Uninduced231.796
SRR8749031Uninduced160.546
SRR8749032Uninduced502.708

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root97.860
SRR8400027Control-Root56.507

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved