Gene detail information of Glyur000483s00030636.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12850.1 | 2.00E-57 | Far-red impaired responsive (FAR1) family protein |
| NR | XP_007140743.1 | 4.25E-136 | hypothetical protein PHAVU_008G138000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 6.00E-25 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|V7B4B6|V7B4B6_PHAVU | 2.00E-136 | Uncharacterized protein {ECO:0000313|EMBL:ESW12737.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00483 | 108539 | 116523 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000483s00030636.1 | PF03101.10 | FAR1 | 48 | 137 | 3.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.784 |
| SRR1783600 | control | 1.716 |
| SRR1783602 | moderate drought stress | 2.442 |
| SRR1811619 | moderate drought stress | 2.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.246 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.182 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.668 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.707 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.033 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.884 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.987 |
| SRR2967015 | Control (Tissue:root) | 6.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.563 |
| SRR9715740 | Leave | 3.637 |
| SRR9715741 | Leave | 3.267 |
| SRR9715739 | Root | 0.188 |
| SRR9715742 | Root | 2.103 |
| SRR9715743 | Root | 1.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.984 |
| SRR8749028 | MeJA induced 9h | 8.957 |
| SRR8749029 | MeJA induced 9h | 7.304 |
| SRR8749030 | Uninduced | 5.736 |
| SRR8749031 | Uninduced | 2.481 |
| SRR8749032 | Uninduced | 3.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.173 |
| SRR8400027 | Control-Root | 4.357 |