Gene detail information of Glyur000483s00030637.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28345.1 | 1.00E-34 | ABC transporter family protein |
| NR | XP_004492229.1 | 7.06E-41 | PREDICTED: ABC transporter B family member 15-like [Cicer arietinum] |
| COG | YP_003627256.1 | 5.00E-26 | lipid A export permease/ATP-binding protein MsbA [Moraxella catarrhalis RH4] |
| Swissprot | tr|Q9LHD1|AB15B_ARATH | 7.00E-39 | ABC transporter B family member 15 |
| trEMBL | tr|G7KWX5|G7KWX5_MEDTR | 4.00E-41 | ABC transporter B family protein {ECO:0000313|EMBL:AES78925.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00483 | 131155 | 137201 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05658 | ABCB1, CD243 | EC:3.6.3.44 | ABC transporters | map02010 |
| Bile secretion | map04976 | |||
| MicroRNAs in cancer | map05206 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.067 |
| SRR1783602 | moderate drought stress | 0.566 |
| SRR1811619 | moderate drought stress | 1.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.196 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.966 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.277 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.148 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.381 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.845 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.137 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.493 |
| SRR2967015 | Control (Tissue:root) | 0.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.459 |
| SRR9715741 | Leave | 0.411 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.157 |
| SRR9715743 | Root | 0.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.015 |
| SRR8749028 | MeJA induced 9h | 0.047 |
| SRR8749029 | MeJA induced 9h | 0.010 |
| SRR8749030 | Uninduced | 0.087 |
| SRR8749031 | Uninduced | 0.060 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.262 |
| SRR8400027 | Control-Root | 0.361 |